Day1: June 13 (Thu), 2013
Day2: June 14 (Fri), 2013
Posters
■Day1: June 13 (Thu), 2013
12:00-13:00
Registration
13:00-13:10
Opening Remarks by Shigehiro Kuraku
Session 1
Chair: Martin Frith
13:10-13:50: S1-1
Diverse Vertebrate Genomic Architecture Elucidated by Wide Taxon Sampling and Modern Sequencing Technologies
Shigehiro Kuraku (RIKEN Center for Developmental Biology, Japan)
13:50-14:30: S1-2
Next-generation Sequencing Data Interpretation: Enhancing Reproducibility and Accessibility
Anton Nekrutenko (Penn State University and The Galaxy Project, USA)
14:30-14:50
Coffee Break
Session 2
Chair: Shigehiro Kuraku
14:50-15:20: S2-1
Deep Exome Sequencing in Macaque Monkeys for the Establishment of Primate Cognitive and Psychiatric Disease Model
Yasuhiro Go (National Institute of Natural Sciences, Japan)
15:20-16:00: S2-2
Molecular Features of Human Evolution
Philipp Khaitovich (CAS-MPG Partner Institute for Computational Biology, Shanghai, China)
16:00-16:30: S2-3
Reconstruction of Protein-coding and Non-coding RNA Co-expression Networks Indicating Tissue-specific Regulatory Roles of Long NcRNAs
Zhipeng Qu (The University of Adelaide, Australia)
16:30-16:50
Coffee Break
Session 3
Shigehiro Kuraku
16:50-17:30: S3-1
The Chromatin Insulator CTCF and the Emergence of Metazoan Diversity
Peter Heger (University of Cologne, Germany)
Flash Talks
Chair: Shigehiro Kuraku
17:30-17:35: P05
Building Cell-type Trees from RNA-seq Data to Find Biologically Meaningful Patterns of Gene Expression
Koryu Kin (Yale Unviersity, USA)
17:35-17:40: P13
Evolution of Insect Wings: A Comparative Analysis of the Genome Wide Targets of the Hox Protein Ultrabithorax in Silkworm and Drosophila to Understand its Role in Gene Regulation
Shreeharsha T. Tarikere (Indian Institute of Science Education and Research (IISER) Pune, India)
17:40-17:45: P16
Lung Transcriptome following Avian Influenza Virus Infection in Two Genetically Distinct Chicken Inbred Lines using RNA-seq
Ying Wang (University of California, Davis, USA)
17:45-17:50: P04
The Genetic Bases of Body Shape Architecture of Two Sympatric Mesoamerican Cichlid Species: a RAD-QTL Approach
Paolo Franchini (University of Konstanz, Germany)
17:50-17:55: P10
Transcriptional, Post-transcriptional and Chromatin Associated Regulation of pri-miRNAs, pre-miRNAs and moRNAs in Zebrafish Development
Chirag Nepal (University of Bergen, Norway)
17:55-18:00: P03
Systematic Identification of Transcriptional Regulatory Modules
Diego Diez (Osaka University, Japan)
18:00-20:30
Poster Session 1 and Reception
■Day2: June 14(Fri), 2013
Session 4
Chair: Martin Frith
9:30-10:00: S4-1
A Systems Biology Approach to Dissecting and Manipulating the Anti-inflammatory Response
Diego Miranda-Saavedra (Osaka University, Japan)
10:00-10:40: S4-2
A Single Molecule Sequencing Expression Atlas
Alistair R.R. Forrest (RIKEN Center for Life Science Technologies, Japan)
10:40-11:00
Coffee Break
Session 5
Chair: Anton Nekrutenko
11:00-11:40: S5-1
High Conservation of Amino Acid Isotypes Despite Divergence of tRNA Gene Usage in Mammalian Genomes
Claudia Kutter (Cambridge Institute - Cancer Research UK, University of Cambridge, UK)
11:40-12:20: S5-2
Lessons from the Lamprey Genome
Jeramiah J. Smith (University of Kentucky, USA)
12:20-14:00
Lunch and Poster Session 2
Session 6
Chair: Alistair Forrest
14:00-14:40: S6-1
Novel Role of PERK-regulated non-coding RNAs in the Unfolded Protein Response Revealed by Comprehensive Gene Expression Analysis
Atsushi Ogura (The University of Tokushima, Japan)
14:40-15:20: S6-2
Classic Alignment Techniques Improve High-throughput DNA Analysis
Martin C. Frith (AIST Computational Biology Research Center, Japan)
15:20-15:40
Coffee Break
Session 7
Chair: Shigehiro Kuraku
15:40-16:20: S7-1
Bisulfighter: Accurate Detection of Methylated Cytosines and Differentially-Methylated Regions
Toutai Mituyama (AIST Computational Biology Research Center, Japan)
16:20-16:50: S7-2
Genome-wide Epigenetic Disregulation in Subtypes of Acute Myeloid Leukemia
Altuna Akalin (Weill Cornell Medical College/Friedrich Miescher Institute for Biomedical Research, USA)
16:50-17:20: S7-3
ARIds: Building Blocks of Complete Desiccation Resistance in the Genome of the Sleeping Chironomid
Oleg Gusev (Kazan Federal University, Russia / National Institute of Agrobiological Sciences, JAXA, Japan)
17:20-17:30
Closing Remarks by Martin Frith
■Posters
(Presenters listed in alphabetical order)
P01
Deep Sequencing at RIKEN CDB: Genomics and Epigenomics for Developmental Biology
Munazah Andrabi (RIKEN Center for Developmental Biology, Japan)
P02
Analysis of Human Disease-associated Genes using Next-generation Sequencing Data
Kenichi Dedachi (Amelieff Co. Ltd., Japan)
P03
Systematic Identification of Transcriptional Regulatory Modules
Diego Diez (Osaka University, Japan)
P04
The Genetic Bases of Body Shape Architecture of Two Sympatric Mesoamerican Cichlid Species: a RAD-QTL Approach
Paolo Franchini (University of Konstanz, Germany)
P05
Building Cell-type Trees from RNA-seq Data to Find Biologically Meaningful Patterns of Gene Expression
Koryu Kin (Yale University, USA)
P06
aLeaves: a Web Server to Help Explore Protein-coding Landscape Across Diverse Animal Genomes
Shigehiro Kuraku (RIKEN Center for Developmental Biology, Japan)
P07
Analyzing the Genome of Sea Lamprey: Vertebrate Genic Novelties and Codon Usage Bias
Tereza Manousaki (University of Konstanz, Germany)
P08
Application of NGS Data Analysis Software to Mapping and Cloning of an Enhancer Mutation of Arabidopsis Thaliana
Akiko Mori (Nagoya University, Japan)
P09
Time-course Analysis of Differentiating Airway Ciliated Cells
Mitsuru Morimoto (RIKEN Center for Developmental Biology, Japan)
P10
Transcriptional, Post-transcriptional and Chromatin Associated Regulation of pri-miRNAs, pre-miRNAs and moRNAs in Zebrafish Development
Chirag Nepal (University of Bergen, Norway)
P11
Identification of MicroRNA Biomarkers for the Prediction of Adverse Reactions to Immunization
Bahtiyor Nosirov (Osaka University, Japan)
P12
Hypothalamic-Pituitary-Gonadal Endocrine System in the Hagfish
Masumi Nozaki (Niigata University, Japan)
P13
Evolution of Insect Wings: A Comparative Analysis of the Genome Wide Targets of the Hox Protein Ultrabithorax in Silkworm and Drosophila to Understand its Role in Gene Regulation
Shreeharsha T Tarikere (Indian Institute of Science Education and Research (IISER) Pune, India)
P14
WITHDRAWN
P15
Towards Comprehensive Understanding of the Dynamic Control of the Immune Response on the Transcriptional and Epigenetic Level
Alexis Vandenbon (Osaka University, Japan)
P16
Lung Transcriptome Following Avian Influenza Virus Infection in Two Genetically Distinct Chicken Inbred Lines using RNA-seq
Ying Wang (University of California, Davis, USA)