PROGRAM
Program at at glance (pdf) Monday, September 29 (Day 1) Tuesday, September 30 (Day 2) Wednesday, October 1 (Day 3) Poster Session| Monday, September 29 (Day 1) | |
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| 9:50 am | Welcome Address by Chris T. Amemiya |
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| Session 1 |
Chair: Richard R. Behringer |
| 10:00 am |
S1-1 |
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| 10:45 am | S1-2 Subfunctionalization of Duplicated Zebrafish pax6 Genes by Regulatory Divergence Dirk A. Kleinjan (MRC Human Genetics Unit, UK) |
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| 11:00 am | S1-3 Cis-regulatory Elements and Evolution Elucidated by Genomic Sequence Comparison of the Vertebrate Dlx3-7 Bigene Clusters Kenta Sumiyama (National Institute of Genetics, Japan) |
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11:15 am - 11: 45 am Coffee Break |
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| Session 2 | Chair: Shin Aizawa |
| 11:45 am | S2-1 Dlx Homeobox Gene Regulation in the Forebrain: A Model for the Evolution of Expression Control in Duplicated Genes Marc Ekker (University of Ottawa, Canada) |
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| 12:15 pm | S2-2 Evolution of Hox Cis-regulatory Elements Robb Krumlauf (Stowers Institute for Medical Research, USA) |
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| 13:00 pm - 15:00 pmLunch and Poster Session 1 |
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| Session 3 | Chair: Robb Krumlauf |
| 15:00 pm | S3-1 Evolution of an Anterior Morphogenetic Center in Long Germ Insects Claude Desplan (NYU Center for Developmental Genetics, USA) |
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| 15:45 pm | S3-2 Evolution of Cis-regulatory Sequences in Drosophila: A Systematic Approach Daniel A. Pollard (New York University, USA) |
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| 16:00 pm | S3-3 A Conserved Transcription Factor Competition Regulates Gene Expression in the Fly Nervous System and in Mouse Hematopoiesis Brian Gebelein (Cincinnati Children's Hospital Medical Center, USA) |
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| 16:15 pm - 16:45 pmCoffee Break |
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| Session 4 | Chair: Claude Desplan |
| 16:45 pm | S4-1 Unsophisticated Approaches to Find Out Cis-regulatory Regions in Ciona intestinalis: A Preliminary Note Nori Satoh (Kyoto University, Japan) |
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| 17:15 pm | S4-2 Making Very Similar Embryos with Divergent Genomes: Conservation of Transcriptional Regulatory Mechanisms of Otx between the Ascidians Halocynthia reretzi and Ciona intestinalis Hidetoshi Saiga (Tokyo Metropolitan University, Japan) |
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| 17:30 pm | S4-3 Dorsal-ventral Patterning of the Drosophila Embryo and Heart Cell Migration in the Ciona Tadpole Michael S. Levine (University of California, Berkeley, USA) |
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| 18:15 pm - 20:15 pmReception at CDB Salon |
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| Tuesday, September 30 (Day 2) | |
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| Session 5 | Chair: Michael S. Levine |
| 9:30 am | S5-1 Genome Evolution and the Dynamic Recruitment of Functional Cis-sequences During the Radiation of Vertebrates Chris T. Amemiya (Benaroya Research Institute, USA) |
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| 10:15 am | S5-2 Hardwired Regulatory Networks Underpin the Evolution of Vertebrate Development Greg Elgar (Queen Mary, University of London, UK) |
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| 11:00 am - 11:30 amCoffee Break |
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| Session 6 | Chair: Greg Elgar |
| 11:30 am | S6-1 Ancient Transcriptional Regulatory Linkages in Development James W. Posakony (University of California, San Diego, USA) |
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| 12:00 pm | S6-2 How Ultra-High Throughput Sequencing is Changing Functional Genomics and Population Genetics Arend Sidow (Stanford University, USA) |
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| 12:45 pm - 15:00 pmLunch and Poster Session 2 |
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| Session 7 | Chair: Arend Sidow |
| 15:00 pm | S7-1 ChIP-seq Successfully Identifies Tissue-specific Enhancers in Vivo Eddy Rubin (DOE Joint Genome Institute, USA) |
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| 15:45 pm | S7-2 Mapping by Hopping: A Transposon-Based Chromosomal Engineering to Survey a Large Cis-regulatory Landscape in the Mouse Genome Chikara Kokubu (Osaka University, Japan) |
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| 16:00 pm | S7-3 SINEs Responsible for Mammalian-Specific Brain Formation Norihiro Okada (Tokyo Institute of Technology, Japan) |
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| 16:30 pm - 17:00 pmCoffee Break |
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| Session 8 | Chair: Eddy Rubin |
| 17:00 pm | S8-1 Cis-regulatory Sequences and Human Evolution Gregory Wray (Duke University, USA) |
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| 17:45 pm | S8-2 Cis-control of HoxD Gene Collinearity Denis Duboule (University of Geneva and Federal Polytechnic School of Lausanne (EPFL), Switzerland) |
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| Wednesday, October 1 (Day 3) | |
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| Session 9 | Chair: Gregory Wray |
| 9:30 am | S9-1 Evolutionary Variation of Paralogue Employment Reflected by Cis-Element Selection Fulfills Regulatory Functions Attributed to B1 Sox Gene Family Hisato Kondoh (Osaka University, Japan) |
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| 10:15 am | S9-2 A Novel Conserved evx1 Enhancer Links Spinal Interneuron Morphology and Cis-regulation from Fish to Mammals Maximiliano L. Suster (National Institute of Genetics, Japan) |
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| 10:30 am | S9-3 Mapping Sonic Hedgehog Cis-regulatory Network in Mammalian Neural Tube Yuichi Nishi (Harvard University, USA) |
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| 10:45 am - 11:15 amCoffee Break |
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| Session 10 | Chair: Hisato Kondoh |
| 11:15 am | S10-1 Functional Importance of Evolutionally Conserved Tbx6 Binding Sites in the Presomitic Mesoderm (PSM) Specific Enhancer of Mesp2 Yukuto Yasuhiko (National Institute of Health Sciences, Japan) |
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| 11:30 am | S10-2 Analysis of the Somite-specific Enhancer of the zic Genes in Medaka: Toward Understanding of the Evolution of the Body Shape in Teleosts Yuuta Moriyama (The University of Tokyo, Japan) |
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| 11:45 am | S10-3 Evolutionary Conserved Non-coding Sequence 1Mb Away from the Shh Coding Region Acts as Limb Bud-specific Shh Enhancer in Mouse Toshihiko Shiroishi (National Institute of Genetics, Japan) |
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| 12:30 pm - 13:30 pmLunch |
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| Session 11 | Chair: Toshihiko Shiroishi |
| 13:30 pm | S11-1 Analysis of the Cis-regulatory Element of Fgf10 Responsible for the Limb Specific Expression Atsushi Kuroiwa (Nagoya University, Japan) |
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| 13:45 pm | S11-2 Tbx Genes and Cis-acting Regulatory Modules for Hindlimb Development and Evolution Douglas B. Menke (Stanford University, USA) |
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| 14:00 pm | S11-3 Fore/Hindlimb Specific Enhancer Analysis in Different Tetrapods Masanobu Morita (The Salk Institute, USA) |
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| 14:15 pm | S11-4 Genetic and Epigenetic Controls of Gene Expression During Limb Regeneration in Xenopus Koji Tamura (Tohoku University, Japan) |
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| 14:30 pm | S11-5 Comparative Studies of Mammalian Development Richard R. Behringer (University of Texas, M. D. Anderson Cancer Center, USA) |
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| 15:15 pm | Closing Remarks by Denis Duboule |
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| Poster Session | |
| Presenters listed in alphabetical order. | |
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| P01 | The Key Regulatory Genes for Lens Development Form a Switch-like Network
Consisting of Multiple Positive Feedback Loops Shin-ichi Aota (RIKEN Center for Developmental Biology, Japan) |
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| P02 | Drosophila Olfactory Local Interneurons and Lateral Projection Neurons Arise from
a Single Lineage Specified by Cephalic Gap Gene empty spiracles Abhijit Das (Tata Institute of Fundamental Research, India) |
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| P03 | Two Regulatory Elements in ParaHox Clusters Derived from Whole Genome Duplication Minaka Ishibashi (National Institute of Genetics, Japan) |
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| P04 | Evolutionary Conservation for the Concordant Regulation of Engrailed2 and Canopy1 in the Midbrain-Hindbrain Boundary Hisaya Kakinuma (RIKEN Brain Science Institute, Japan) |
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| P05 | Analysis of the Influence of Ribosome Initiation Context on Transgene Expression
in Plants Shaveta Kanoria (University of Delhi, India) |
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| P06 | Subfunctionalization of Duplicated Zebrafish pax6 Genes by Regulatory Divergene Dirk A. Kleinjan (MRC Human Genetics Unit, UK) |
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| P07 | Mapping by Hopping: A Transposon-Based Chromosomal Engineering to Survey
a Large Cis-regulatory Landscape in the Mouse Genome Chikara Kokubu (Osaka University, Japan) |
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| P08 | Regulatory Perspective of Mouse Meis2 Locus Takashi Kondo (RIKEN Brain Science Institute, Japan) |
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| P09 | Gene Regulatory Mechanisms Underlying the Determination of Neuronal Identity
in the Ascidian Larva Takehiro G. Kusakabe (University of Hyogo, Japan) |
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| P10 | Fore/Hindlimb Specific Enhancer Analysis in Different Tetrapods Masanobu Morita (The Salk Institute, USA) |
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| P11 | Analysis of the Somite-specific Enhancer of the zic Genes in Medaka: Toward Understanding of the Evolution of the Body Shape in Teleosts Yuuta Moriyama (The University of Tokyo, Japan) |
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| P12 | The Evolution of Vertebrate ParaHox Gene Clusters John Mulley (University of Oxford, UK) |
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| P13 | Mapping Sonic Hedgehog Cis-regulatory Network in Mammalian Neural Tube Yuichi Nishi (Harvard University, USA) |
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| P14 | An Embryological Ground Plan for Rapid Evolution of Insect Wing Nao Niwa (RIKEN Center for Developmental Biology, Japan) |
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| P15 | Genome-wide Analysis of Vertebrate Cis-regulatory Elements in Xenopus Hajime Ogino (Nara Institute of Science and Technology, Japan) |
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| P16 | Conserved and Diverse Aspects of Oct4/Pou5f1 - Dependent Regulatory Network in Vertebrates Daria Onichtchouk (University of Freiburg, Germany) |
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| P17 | Evolution of Cis-regulatory Sequences in Drosophila: A Systematic Approach Daniel A. Pollard (New York University, USA) |
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| P18 | WITHDRAW |
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| P19 | Studying the Regulation of Vesicular Glutamate Transporter and Motor Neuron
Development in Drosophila Onteddu Venkateswara Reddy (National Center for Biological Sciences, India) |
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| P20 | WITHDRAW |
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| P21 |
Making Very Similar Embryos with Divergent Genomes: Conservation of Transcriptional Regulatory Mechanisms of Otx between the Ascidians Halocynthia roretzi and Ciona intestinalis |
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| P22 | Evolution of Preplacodal Region and Sensory Placodes Shigeru Sato (Jichi Medical University, Japan) |
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| P23 | Evolution of Hox and Carapace Developing Genes in the Water Flea, Daphnia (Anomopoda, 'Cladocera', Branchiopoda) Yasuhiro Shiga (Tokyo University of Pharmacy and Life Sciences, Japan) |
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| P24 | Chromosomal Level Regulation of Gene Expression in the Ciona intestinalis Embryo Eiichi Shoguchi (Kyoto University, Japan) |
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| P25 | Acquisition of a Novel Calcium Regulating Organ during Vertebrate Evolution Takanori Shono (Jikei University, Japan) |
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| P26 | Cis-regulatory Elements and Evolution Elucidated by Genomic Sequence Comparison
of the Vertebrate Dlx3-7 Bigene Clusters Kenta Sumiyama (National Institute of Genetics, Japan) |
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| P27 | A Knock-in Mouse Model Uncovers Common and Specific Roles of Two Related
CKIs p27 and p57 Etsuo Susaki (Kyushu University, Japan) |
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| P28 | WITHDRAW |
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| P29 | Sharing of Ancient Cis-regulatory Elements Locks the Mab21 and Lrba/Nbea Gene Pair in Animal Genomes Wai Hung Tsang (The Hong Kong University of Science and Technology, Hong Kong) |
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| P30 | Evolutionary Conservation and Diversification of Cis-regulatory Mechanisms
Studied through Cone Opsin Genes of Zebrafish Taro Tsujimura (The University of Tokyo, Japan) |
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| P31 | Reversal of Hox1 Gene Subfunctionalization Petr Tvrdik (University of Utah, USA) |
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| P32 | De-functionalization of Pax2 Enhancer Sub-domains in Amniotes Vassil Vassilev (RIKEN Center for Developmental Biology, Japan) |
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| P33 | Transcriptional Regulation of fgf8 at the Midbrain-Hindbrain Boundary is Conserved during Vertebrate Evolution Kyo Yamasu (Saitama University, Japan) |
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| L01 | Prediction for Placodal Enhancers in Chordate Embryos Yan Jaszczyszyn (INRA MWSNC Group, DEPSN, Institut A. Fessard, CNRS, France) |
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| L02 | Overrepresented Motifs in Highly Conserved Non-protein-coding Regions of
Vertebrate Genomes Naoki Osato (Computational Biology Research Center, Japan) |
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